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Breeding and genetics: Genomic evaluation II - Applications

Thursday, July 21, 2016: 9:30 AM-12:30 PM
Grand Ballroom I (Salt Palace Convention Center)
Chair:
Ignacy Misztal
9:30 AM
302
Identifying and calling insertions, deletions, and single-base mutations efficiently from sequence data
Paul M. VanRaden, Animal Genomics and Improvement Laboratory, Agricultural Research Service, USDA; Derek M. Bickhart, Animal Genomics and Improvement Laboratory, USDA-ARS; Jeffrey R O'Connell, University of Maryland School of Medicine
9:45 AM
303
Issues in commercial application of single-step genomic BLUP for genetic evaluation in American Angus
Daniela A. L. Lourenco, University of Georgia; Shogo Tsuruta, University of Georgia; Breno d Fragomeni, University of Georgia; Yutaka Masuda, University of Georgia; Ivan Pocrnic, University of Georgia; Ignacio Aguilar, INIA; J. Keith Bertrand, University of Georgia; Dan W Moser, Angus Genetics Inc.; Ignacy Misztal, University of Georgia
10:00 AM
304
Single-step GBLUP using APY inverse for protein yield in US Holstein with a large number of genotyped animals
Yutaka Masuda, University of Georgia; Ignacy Misztal, University of Georgia; Paul M. VanRaden, Animal Genomics and Improvement Laboratory, Agricultural Research Service, USDA
10:15 AM
305
Heteroskedastic extensions for genome-wide association studies
Zhining Ou, Department of Statistics, Kansas State University; Robert J. Tempelman, Michigan State University; Juan P. Steibel, Department of Animal Science, Michigan State University; Catherine W. Ernst, Department of Animal Science, Michigan State University; Ronald O. Bates, Department of Animal Science, Michigan State University; Chunyu Chen, Department of Animal Science, Michigan State University; Nora M. Bello, Department of Statistics, Kansas State University
10:30 AM
306
Exploring the feasibility of using copy number variants as genetic markers through large-scale whole genome sequencing experiments
Derek M. Bickhart, Animal Genomics and Improvement Laboratory, USDA-ARS; Lingyang Xu, Department of Animal and Avian Sciences, University of Maryland; J L Hutchison, Animal Improvement Programs Laboratory, USDA-ARS; John B Cole, Animal Genomics and Improvement Laboratory, Agricultural Research Service, United States Department of Agriculture; Daniel J Null, Animal Genomics and Improvement Laboratory, Agricultural Research Service, United States Department of Agriculture; Steven G Schroeder, Animal Genomics and Improvement Laboratory, ARS, USDA; Jiuzhou Song, University of Maryland, Animal Science and Avian; José F. Garcia, UNESP Univ Estadual Paulista; Tad Sonstegard, Recombinetics, Inc.; Curt P VanTassell, Animal Genomics and Improvement Laboratory, ARS, USDA; Robert D. Schnabel, University of Missouri; Jeremy F Taylor, University of Missouri; George E Liu, Animal Genomics and Improvement Laboratory, ARS, USDA
10:45 AM
307
Use of marker × environment interaction whole genome regression model to incorporate genetic heterogeneity for residual feed intake, dry matter intake, net energy in milk, and metabolic body weight in dairy cattle
Chen Yao, University of Wisconsin; Gustavo de los Campos, Michigan State University; Michael J. VandeHaar, Michigan State University; Diane M. Spurlock, Iowa State University; Lou E Armentano, University of Wisconsin - Madison; Mike P Coffey, SRUC; Yvette de Haas, Animal Breeding and Genomics Centre, Wageningen UR Livestock Research; Roel F. Veerkamp, Animal Breeding and Genomics Centre, Wageningen University; Charles R. Staples, Dept. of Animal Sciences, University of Florida; Erin E Connor, USDA-ARS, Animal Genomics and Improvement Laboratory; Zhiquan Wang, University of Alberta; Robert J. Tempelman, Michigan State University; Kent A. Weigel, University of Wisconsin
11:00 AM
Break
11:15 AM
308
Imputation of medium density genotypes from custom low density genotype panel in sheep
Donagh P Berry, Teagasc, Moorepark; Aine O'Brien, Teagasc; Shane Randles, Sheep ireland; Kevin McDermott, Sheep ireland; Eamon Wall, Sheep ireland; Noirin McHugh, Teagasc Moorepark
11:30 AM
309
Systematic profiling of short tandem repeats in the cattle genome
George E Liu, Animal Genomics and Improvement Laboratory, ARS, USDA; Lingyang Xu, Animal Genomics and Improvement Laboratory, ARS, USDA; Ryan Haasl, University of Wisconsin – Platteville; Jiajie Sun, South China Agricultural University; Yang Zhou, Animal Genomics and Improvement Laboratory, ARS, USDA; Derek M. Bickhart, Animal Genomics and Improvement Laboratory, USDA-ARS; JunYa Li, Institute of Animal Science of Chinese Academy of Agricultural Sciences, Beijing, China; Jiuzhou Song, University of Maryland, Animal Science and Avian; Tad Sonstegard, Recombinetics, Inc.; Curt P VanTassell, Animal Genomics and Improvement Laboratory, ARS, USDA; Harris Lewin, University of California, Davis, Department of Evolution and Ecology
11:45 AM
310
Assessing genetic diversity in Canadian beef cattle populations using Illumina BovineSNP50 chip
Mohammed K Abo-Ismail, Animal and Poultry Production, Damanhour University; Everestus C. Akanno, Livestock Gentec, Department of Agricultural, Food and Nutritional Science, University of Alberta; Razie Khorshidi, Livestock Gentec, Department of Agricultural, Food and Nutritional Science, University of Alberta; John Crowley, Canadian Beef Breeds Council; Liuhong Chen, Livestock Gentec, Department of Agricultural, Food and Nutritional Science, University of Alberta; Brian K Karisa, Alberta Livestock and Meat Agency Ltd; Xiuling Li, Livestock Gentec, Department of Agricultural, Food and Nutritional Science, University of Alberta; Zhiquan Wang, Livestock Gentec, Department of Agricultural, Food and Nutritional Science, University of Alberta; John Basarab, Livestock Gentec, Department of Agricultural, Food and Nutritional Science, University of Alberta; Changxi Li, Livestock Gentec, Department of Agricultural, Food and Nutritional Science, University of Alberta; Paul Stothard, Livestock Gentec, Department of Agricultural, Food and Nutritional Science, University of Alberta; Graham Plastow, Livestock Gentec, Department of Agricultural, Food and Nutritional Science, University of Alberta
12:00 PM
311
Joint association analysis of additive and non-additive genomic effects for growth and carcass traits of beef cattle
Everestus C. Akanno, Livestock Gentec, Department of Agricultural, Food and Nutritional Science, University of Alberta; Mohammed K Abo-Ismail, Animal and Poultry Production, Damanhour University; Liuhong Chen, Livestock Gentec, Department of Agricultural, Food and Nutritional Science, University of Alberta; Changxi Li, Livestock Gentec, Department of Agricultural, Food and Nutritional Science, University of Alberta; John Basarab, Livestock Gentec, Department of Agricultural, Food and Nutritional Science, University of Alberta; Graham Plastow, Livestock Gentec, Department of Agricultural, Food and Nutritional Science, University of Alberta
12:15 PM
312
Investigation of genomic imprinting through allelic expression analysis of mRNA in chicken embryonic brain and liver
Zhu Zhuo, Department of Animal and Food Sciences, University of Delaware; Susan J Lamont, Department of Animal Science, Iowa State University; Behnam Abasht, Department of Animal and Food Sciences, University of Delaware
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